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netZooM is a catalog of methods for the reconstruction and analysis of network biology methods.

netZooM has started as a merge of the following repositories and forks:

• Cho-Yi Chen’s MATLAB PANDA which was forked from Kimberly Glass’s PANDA.
• Marieke Kuijjer’s PUMA

Contents

• Installation guide
  • Requirements
  • Install
  • Troubleshooting

• Functions
  • panda_run
  • lioness_run
  • RunPUMA
  • UpdateDiagonal
  • Tfunction
  • SavePairs
  • Pairs2Mat
  • PANDA
  • PUMA
  • NormalizeNetwork
  • Coexpression

• Tutorials

• Changelog
  • 0.5.1 (2020-06-27)
  • 0.5.0 (2020-05-02)
  • 0.4.3 (2020-03-06)
  • 0.4.2 (2020-02-21)
  • 0.4.1 (2020-01-18)
  • 0.4.0 (2019-12-10)
  • 0.3.0 (2019-11-17)
  • 0.2.0 (2019-11-13)
  • 0.1.0 (2019-5-28)

Indices and tables

• Index
• Module Index
• Search Page